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Sample GSM66308 Query DataSets for GSM66308
Status Public on Jan 01, 2006
Title Saccharomyces cerevisiae Sgu421 NS24 Ds288c NS24 Array_A
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae Sgu421 in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sgu421 in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy5
Label protocol See Townsend, Cavalieri and Hartl 2003
 
Channel 2
Source name Saccharomyces cerevisiae Ds288c in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Ds288c in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy3
Label protocol See Townsend, Cavalieri and Hartl 2003
 
 
Scan protocol
Description Some hybridizations were performed in duplicates on the same microarrays. Two complete sets of PCR products were printed on the same glass slide and under a single cover slip. These duplicates are labeled Array_A and Array_B. Since these are not complete technical replicates, they were averaged in Landry et al. (Gene, accepted) following the normalization and prior to statistical analysis. Replicate indicates a complete independent hybridization.
Data processing Spots of bad quality were given negative flags. Nonnormalized ratios are provided.
 
Submission date Jul 27, 2005
Last update date Jul 28, 2005
Contact name Duccio Cavalieri
E-mail(s) duccio.cavalieri@unifi.it
Phone 39.055.4271327
Fax 39.055.4271280
Organization name University of Florence
Department Department of Pharmacology
Street address Viale Pieraccini 6
City Florence
ZIP/Postal code 50139
Country Italy
 
Platform ID GPL2682
Series (1)
GSE3021 Six diploid strains grown in four conditions

Data table header descriptions
ID_REF Platform ID
VALUE log ratio of median F635 divided by F532
F635 Median
B635 Median
F532 Median
B532 Median
Flags zero signififies pass, less than zero is a bad spot

Data table
ID_REF VALUE F635 Median B635 Median F532 Median B532 Median Flags
1 -1.81 108 40 378 115 0
2 -1.51 721 93 2055 269 0
3 -1.18 2277 46 5151 139 0
4 -1.33 888 56 2232 176 0
5 -2.20 5884 51 27009 154 0
6 -2.68 660 43 4224 137 0
7 -1.37 363 64 936 204 0
8 -1.15 510 38 1134 108 0
9 -1.36 349 43 893 119 0
10 -1.15 292 112 649 296 0
11 -0.85 5760 55 10396 162 0
12 -0.92 1077 121 2044 333 0
13 -0.95 1124 74 2175 240 0
14 -1.13 557 89 1219 266 0
15 -0.86 1350 85 2447 274 0
16 -1.44 1075 64 2909 187 0
17 -1.15 155 43 343 119 0
18 -0.98 1166 87 2306 265 0
19 -1.02 1136 47 2311 143 0
20 -1.38 1258 56 3278 174 0

Total number of rows: 6218

Table truncated, full table size 175 Kbytes.




Supplementary data files not provided

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