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Sample GSM66321 Query DataSets for GSM66321
Status Public on Jan 01, 2006
Title Saccharomyces cerevisiae Sgu52 NS24 EM93 NS24 Array_A
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae Sgu52 in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae Sgu52 in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy5
Label protocol See Townsend, Cavalieri and Hartl 2003
 
Channel 2
Source name Saccharomyces cerevisiae EM93 in NS24
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae EM93 in NS24
Extracted molecule polyA RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003
Label Cy3
Label protocol See Townsend, Cavalieri and Hartl 2003
 
 
Scan protocol
Description Some hybridizations were performed in duplicates on the same microarrays. Two complete sets of PCR products were printed on the same glass slide and under a single cover slip. These duplicates are labeled Array_A and Array_B. Since these are not complete technical replicates, they were averaged in Landry et al. (Gene, accepted) following the normalization and prior to statistical analysis. Replicate indicates a complete independent hybridization.
Data processing Spots of bad quality were given negative flags. Nonnormalized ratios are provided.
 
Submission date Jul 27, 2005
Last update date Jul 28, 2005
Contact name Duccio Cavalieri
E-mail(s) duccio.cavalieri@unifi.it
Phone 39.055.4271327
Fax 39.055.4271280
Organization name University of Florence
Department Department of Pharmacology
Street address Viale Pieraccini 6
City Florence
ZIP/Postal code 50139
Country Italy
 
Platform ID GPL2682
Series (1)
GSE3021 Six diploid strains grown in four conditions

Data table header descriptions
ID_REF Platform ID
VALUE log ratio of median F635 divided by F532
F635 Median
B635 Median
F532 Median
B532 Median
Flags zero signififies pass, less than zero is a bad spot

Data table
ID_REF VALUE F635 Median B635 Median F532 Median B532 Median Flags
1 -0.58 339 45 506 87 0
2 -1.60 108 35 328 65 0
3 -1.56 788 48 2319 99 0
4 -1.22 244 39 567 75 0
5 -3.75 1914 42 25804 94 0
6 -1.90 158 39 590 78 0
7 -0.94 457 38 875 78 0
8 -0.43 279 38 376 81 0
9 -0.53 386 40 559 80 0
10 -0.89 256 39 475 77 0
11 -3.38 236 42 2458 92 0
12 -1.24 452 36 1067 73 0
13 -1.25 391 38 929 76 0
14 -1.63 241 39 747 92 0
15 -1.12 997 40 2166 80 0
16 -1.13 437 39 955 79 0
17 -1.15 148 44 329 81 0
18 -1.56 333 36 979 68 0
19 -1.15 382 45 849 94 0
20 -1.39 508 38 1330 78 0

Total number of rows: 6218

Table truncated, full table size 165 Kbytes.




Supplementary data files not provided

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