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Status |
Public on Apr 13, 2011 |
Title |
Healthy EPCs/CACs, non-IFNa treated, 102 |
Sample type |
RNA |
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|
Source name |
Healthy EPCs/CACS not incubated with IFNa
|
Organism |
Homo sapiens |
Characteristics |
tissue: peripheral blood cell type: endothelial progenitor cells (EPCs)/myeloid circulating angiogenic cells (CACs) disease state: healthy treatment: untreated
|
Treatment protocol |
Cells were incubated in the presence or absence of IFNa for 6 hours prior to RNA harvesting.
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Growth protocol |
PBMCs containing EPCs and CACs were cultured in endothelial cell-specific enrichment medium on fibronectin-coated wells.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated with Tri-pure (Roche), and further purified and concentrated using an Rneasy kit (Qiagen).
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
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|
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Hybridization protocol |
Standard Affymetrix protocol (GeneChip Expression Analysis Technical Manual).
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Scan protocol |
GeneChips were scanned using the Affymetrix 3000 7G GeneChip Scanner with Autoloader.
|
Description |
Ctrl_NT_102 Gene expression data from healthy EPCs/CACs not-incubated with IFNa.
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Data processing |
The data were analyzed using the GenePattern pipeline: the RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization. Healthy EPCs, lupus EPCs and healthy bone marrow EPCs were normalized separately.
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Submission date |
Jan 28, 2011 |
Last update date |
Apr 13, 2011 |
Contact name |
Celine C Berthier |
Organization name |
University of Michigan
|
Street address |
1150 W. Medical Center Dr, MSRB2
|
City |
Ann Arbor |
State/province |
MI |
ZIP/Postal code |
48109 |
Country |
USA |
|
|
Platform ID |
GPL11670 |
Series (2) |
GSE23203 |
Expression data from human healthy and lupus EPCs/CACs, and healthy CD133+ bone marrow EPCs |
GSE26949 |
Expression data from human healthy EPCs/CACs |
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