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Status |
Public on Jul 31, 2023 |
Title |
Nucleus accumbens, MAN1 female, rep2 [Lib05_S5] |
Sample type |
SRA |
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Source name |
Nucleus accumbens
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Organism |
Microtus ochrogaster |
Characteristics |
tissue: Nucleus accumbens treatment: MAN1 Sex: F
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Extracted molecule |
total RNA |
Extraction protocol |
Qiagen AllPrep DNA/RNA mini kit NEBNext Ultra Directional RNA Library Prep Kit with mRNA magnetic isolation
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
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Description |
Danoff_GEO_processed.csv
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Data processing |
TrimGalore: removal of auto-deteted Illumina adapters and trimming of low-quality ends up to a threshold of Q20 MultiQC: quality control Kallisto: pseudoalignment and transcript quantification Assembly: Microtus ochrogaster, MichOch v1.0, Ensembl release version 96 Supplementary files format and content: csv; raw counts
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Submission date |
Apr 08, 2023 |
Last update date |
Jul 31, 2023 |
Contact name |
Joshua Danoff |
E-mail(s) |
jsd5zs@virginia.edu
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Organization name |
University of Virginia
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Street address |
485 McCormick Road
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City |
Charlottesville |
State/province |
VA |
ZIP/Postal code |
22903 |
Country |
USA |
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Platform ID |
GPL31149 |
Series (1) |
GSE229256 |
Male specific impact of parental care on gene expression in nucleus accumbens |
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Relations |
SRA |
SRX19911201 |
BioSample |
SAMN34121763 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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