|
| Status |
Public on Apr 04, 2012 |
| Title |
C1_H240 |
| Sample type |
RNA |
| |
|
| Source name |
Human Whole Blood
|
| Organism |
Homo sapiens |
| Characteristics |
patient_set: Training
cohort_id: 1
patient_id: C1_H240
disease: Healthy
age: 4
ethnicity: H
gender: M
tissue: Whole Blood
illness: Healthy
isolate_analyzed: Healthy
isolate_id: Healthy
isolate_strain: Healthy
isolate_sscmec: Healthy
isolate_agr_type: Healthy
isolate_rep_pcr: Healthy
isolate_pvl: Healthy
isolate_tsst: Healthy
isolate_sea: Healthy
isolate_seb: Healthy
isolate_sec: Healthy
isolate_seh: Healthy
isolate_seg: Healthy
isolate_eta: Healthy
isolate_etb: Healthy
admission_date: Healthy
draw_date: Missing Data
discharge_date: Healthy
hospitalization_duration: Healthy
draw_day: Healthy
draw_index: Healthy
disease_onset: Healthy
onset_to_draw: Healthy
onset_to_discharge: Healthy
onset_index: Healthy
hospitalization_quarter: Healthy
onset_tier: Healthy
cluster: Healthy
mdth: 109.44
disease_severity: Healthy
infection_localization: Healthy
clinical_presentation: Healthy
treatment: Healthy
bacteremia: N/A
osteomyelitis: N/A
suppurative_arthitis: N/A
pyomyositis: N/A
sst_abscess: N/A
pneumonia: N/A
empyema: N/A
endocarditis: N/A
pericarditis: N/A
cellulitis: N/A
meningitis: N/A
emboli: N/A
sepsis: N/A
dvt: N/A
picu: N/A
intubation: N/A
wbc (/ul): 5500
neutrophil (%): 34.7
lymphocyte (%): 53.7
monocytes (%): 7.1
eosinophils (%): 3.8
basophils (%): 0.7
bands: Missing Data
neutrophils (/ul): 1908.5
lymphocytes (/ul): 2953.5
monocytes (/ul): 390.5
eosinophils (/ul): 209
basophils (/ul): 38.5
rbc (106/mm3): 4.03
hemoglobin (g/dl): 9.3
hematocrit (%): 28.2
mcv (um3): 70
mch (pg): 23
mchc (g/dl): 32.9
rdw (%): 14.9
platelets (103/mm3): 288
mpv (um3): 10
esr: Missing Data
crp (mg/dl): Missing Data
rbc morphology: Missing Data
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with MagMAX™ RNA Isolation Kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Illumina® TotalPrep-96 RNA Amplification Kit
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol with BeadArray Reader 500X
|
| Data processing |
The data were normalised using average normalisation with Genome Studio
|
| |
|
| Submission date |
Jun 21, 2011 |
| Last update date |
Apr 04, 2012 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE30119 |
Genome-wide analysis of whole blood transcriptional response to community-acquired Staphylococcus aureus infection in vivo |
|
