|
| Status |
Public on Apr 04, 2012 |
| Title |
C1_SA1267 |
| Sample type |
RNA |
| |
|
| Source name |
Human Whole Blood
|
| Organism |
Homo sapiens |
| Characteristics |
patient_set: Training
cohort_id: 1
patient_id: C1_SA1267
disease: S. aureus
age: 1.1
ethnicity: H
gender: F
tissue: Whole Blood
illness: Pneumonia
isolate_analyzed: no
isolate_id: No Isolate
isolate_strain: MRSA
isolate_sscmec: No Data
isolate_agr_type: No Data
isolate_rep_pcr: No Data
isolate_pvl: No Data
isolate_tsst: No Data
isolate_sea: No Data
isolate_seb: No Data
isolate_sec: No Data
isolate_seh: No Data
isolate_seg: No Data
isolate_eta: No Data
isolate_etb: No Data
admission_date: 2009-02-23
draw_date: 2009-03-03
discharge_date: 2009-03-06
hospitalization_duration: 11
draw_day: 8
draw_index: 0.73
disease_onset: 1
onset_to_draw: 9
onset_to_discharge: 12
onset_index: 0.75
hospitalization_quarter: Quarter 3
onset_tier: Tier 3
cluster: C2
mdth: 601.31
disease_severity: Moderate
infection_localization: Invasive
clinical_presentation: Pneumonia
treatment: Clindamycin
bacteremia: 0
osteomyelitis: 0
suppurative_arthitis: 0
pyomyositis: 0
sst_abscess: 0
pneumonia: 1
empyema: 1
endocarditis: 0
pericarditis: 0
cellulitis: 0
meningitis: 0
emboli: 0
sepsis: 0
dvt: 0
picu: 0
intubation: 0
wbc (/ul): 28100
neutrophil (%): 47
lymphocyte (%): 39
monocytes (%): 8
eosinophils (%): Missing Data
basophils (%): 2
bands: 4
neutrophils (/ul): 13207
lymphocytes (/ul): 10959
monocytes (/ul): 2248
eosinophils (/ul): Missing Data
basophils (/ul): 562
rbc (106/mm3): 4.26
hemoglobin (g/dl): 10.5
hematocrit (%): 31.8
mcv (um3): 74.6
mch (pg): 24.6
mchc (g/dl): 33
rdw (%): 13.4
platelets (103/mm3): 880
mpv (um3): 8.9
esr: 56
crp (mg/dl): 6
rbc morphology: Missing Data
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with MagMAX™ RNA Isolation Kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Illumina® TotalPrep-96 RNA Amplification Kit
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol with BeadArray Reader 500X
|
| Data processing |
The data were normalised using average normalisation with Genome Studio
|
| |
|
| Submission date |
Jun 21, 2011 |
| Last update date |
Apr 04, 2012 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE30119 |
Genome-wide analysis of whole blood transcriptional response to community-acquired Staphylococcus aureus infection in vivo |
|
