|
| Status |
Public on Apr 04, 2012 |
| Title |
C2_SA598 |
| Sample type |
RNA |
| |
|
| Source name |
Human Whole Blood
|
| Organism |
Homo sapiens |
| Characteristics |
patient_set: Test
cohort_id: 2
patient_id: C2_SA598
disease: S. aureus
age: 0.25
ethnicity: AA
gender: F
tissue: Whole Blood
illness: Abscess
isolate_analyzed: yes
isolate_id: 40
isolate_strain: MRSA
isolate_sscmec: IV
isolate_agr_type: I
isolate_rep_pcr: 500
isolate_pvl: 1
isolate_tsst: 0
isolate_sea: 0
isolate_seb: 0
isolate_sec: 0
isolate_seh: 0
isolate_seg: 0
isolate_eta: 0
isolate_etb: 0
admission_date: 2006-05-12
draw_date: 2006-05-18
discharge_date: 2006-05-23
hospitalization_duration: 11
draw_day: 6
draw_index: 0.55
disease_onset: 4
onset_to_draw: 10
onset_to_discharge: 15
onset_index: 0.67
hospitalization_quarter: Quarter 3
onset_tier: Tier 3
cluster: C4
mdth: 373.02
disease_severity: Moderate
infection_localization: Invasive
clinical_presentation: Invasive
treatment: Clindamycin
bacteremia: 0
osteomyelitis: 0
suppurative_arthitis: 0
pyomyositis: 0
sst_abscess: 1
pneumonia: 0
empyema: 0
endocarditis: 0
pericarditis: 0
cellulitis: 1
meningitis: 0
emboli: 0
sepsis: 0
dvt: 0
picu: 0
intubation: 0
wbc (/ul): 15900
neutrophil (%): 12
lymphocyte (%): 68
monocytes (%): 9
eosinophils (%): 10
basophils (%): Missing Data
bands: 1
neutrophils (/ul): 1908
lymphocytes (/ul): 10812
monocytes (/ul): 1431
eosinophils (/ul): 1590
basophils (/ul): Missing Data
rbc (106/mm3): 2.33
hemoglobin (g/dl): 6.3
hematocrit (%): 19.7
mcv (um3): 84.5
mch (pg): 27
mchc (g/dl): 32
rdw (%): 13.7
platelets (103/mm3): 424
mpv (um3): 9.9
esr: Missing Data
crp (mg/dl): 0.7
rbc morphology: normal
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with MagMAX™ RNA Isolation Kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Illumina® TotalPrep-96 RNA Amplification Kit
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol with BeadArray Reader 500X
|
| Data processing |
The data were normalised using average normalisation with Genome Studio
|
| |
|
| Submission date |
Jun 21, 2011 |
| Last update date |
Apr 04, 2012 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE30119 |
Genome-wide analysis of whole blood transcriptional response to community-acquired Staphylococcus aureus infection in vivo |
|
