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Sample GSM747099 Query DataSets for GSM747099
Status Public on Sep 27, 2011
Title B-CLL sample 8
Sample type RNA
 
Channel 1
Source name CD5+CD19+ non-SP B-CLL
Organism Homo sapiens
Characteristics tumor location: PBMC
sorting selection: non-SP
Extracted molecule total RNA
Extraction protocol Miltenyi Biotec SuperAmp extraction, amplification and purification
Label Cy3
Label protocol 250 ng of each of the cDNAs were used as template for Cy3 and Cy5 labeling which was performed according to Miltenyi Biotec’s undisclosed protocol
 
Channel 2
Source name CD5+CD19+ SP B-CLL
Organism Homo sapiens
Characteristics tumor location: PBMC
sorting selection: SP
Extracted molecule total RNA
Extraction protocol Miltenyi Biotec SuperAmp extraction, amplification and purification
Label Cy5
Label protocol 250 ng of each of the cDNAs were used as template for Cy3 and Cy5 labeling which was performed according to Miltenyi Biotec’s undisclosed protocol
 
 
Hybridization protocol Hybridization performed per Miltenyi Biotec's standard MACS Molecular Agilent hybridization protocol
Scan protocol Scanned on an Agilent G2505B scanner; Images were quantified using Agilent Feature Extraction Software (v.9.1)
Data processing Agilent Feature Extraction Software (v.9.1) was used for background subtraction
 
Submission date Jun 22, 2011
Last update date Sep 27, 2011
Contact name Aaron E Foster
E-mail(s) afoster@bellicum.com
Phone 832-384-1125
Organization name Bellicum Pharmaceuticals
Department Product Discovery
Street address 2130 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL4133
Series (1)
GSE30171 B-cell chronic lymphocytic leukemia side population cells

Data table header descriptions
ID_REF
VALUE Log10 ratio (CD5+CD19+ SP B-CLL/CD5+CD19+ non-SP B-CLL
CH1_SIG_MEAN CD5+CD19+ non-SP B-CLL
CH2_SIG_MEAN CD5+CD19+ SP B-CLL

Data table
ID_REF VALUE CH1_SIG_MEAN CH2_SIG_MEAN
1 0.030198945 39510.8 42355.98
2 0.088027738 9.514282 11.65209
3 0 9.790708 5.4461
4 0 9.834783 5.449674
5 0 9.870413 5.448579
6 0 9.898268 5.441965
7 0 9.918639 5.43042
8 0 9.932157 5.41523
9 0 9.938493 5.394321
10 0 9.939205 5.371773
11 0 9.932795 5.343383
12 -0.384182755 303.4444 125.2842
13 -0.721725404 2768.239 525.3857
14 -1.796107046 967.8826 15.47803
15 0 9.858004 5.206878
16 -0.629944781 12155.37 2849.86
17 0.412386492 297.2701 768.3123
18 0.163311293 569.9535 830.1388
19 -0.147604746 88780.91 63199.67
20 0.392836587 1269.121 3135.736

Total number of rows: 45015

Table truncated, full table size 1533 Kbytes.




Supplementary file Size Download File type/resource
GSM747099.txt.gz 14.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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