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Sample GSM754545 Query DataSets for GSM754545
Status Public on Jul 07, 2011
Title blood 2g T7 ppD
Sample type RNA
 
Source name blood 2g T7 ppD
Organism Homo sapiens
Characteristics donor: D
Sex: M
tissue: blood
treatment: 2g APAP exposure
time: 7h
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PAXgene Blood RNA kit (PreAnalytiX/Qiagen) according to the manufacturers protocol (including Dnase) and was globin reduced using the GLOBINclear kit (Ambion) according to the manufacturers protocol
Label biotin
Label protocol We used standard Affymetrix labeling protocols
 
Hybridization protocol We used standard Affymetrix hybridisation rotocols
Scan protocol We used standard Affymetrix scanning parameters
Description globin reduced total RNA
sample 2g APAP exposure
Data processing All samples were normalized by RMA algorithm and analyzed by SAM (FC>1.5 and FDR<10%).
 
Submission date Jul 05, 2011
Last update date Jul 07, 2011
Contact name marlon jetten
E-mail(s) marlon.jetten@maastrichtuniversity.nl
Organization name maastricht university
Street address universiteitssingel 50
City Maastricht
ZIP/Postal code 6200MD
Country Netherlands
 
Platform ID GPL10526
Series (1)
GSE30418 Low dose human APAP exposure

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1_at 47.72049052
10_at 9.834427462
100_at 370.4937173
1000_at 21.75043899
10000_at 13.4614905
10001_at 181.5297379
10002_at 11.19145789
10003_at 5.986530099
10004_at 70.19134483
100048912_at 11.87424977
100049716_at 70.1170951
10005_at 210.8795657
10006_at 372.9866806
10007_at 258.089083
10008_at 365.9220284
10009_at 102.211972
100093630_at 99.69840337
1001_at 13.92605749
10010_at 178.2606684
100101467_at 52.41982174

Total number of rows: 17788

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM754545_ppD_t7_HG-U133_Plus_2_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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