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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 20, 2024 |
| Title |
CSF, HC 11 |
| Sample type |
SRA |
| |
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| Source name |
CSF
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| Organism |
Homo sapiens |
| Characteristics |
tissue: CSF
cell type: multiple
infection: healthy control
condition: healthy control
treatment: none
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
NA
10X Gene Expression
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
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| Data processing |
Demultiplexing with cellranger v6.0 mkfastq
Barcode and UMI deconvolution, mapping with cellranger v6 count
Assembly: GRCh38
Supplementary files format and content: .h5 files (HDF5) for cellranger of deconvoluted gene expression matrix
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| |
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| Submission date |
Aug 22, 2023 |
| Last update date |
May 20, 2024 |
| Contact name |
Alexander Lemenze |
| Organization name |
Rutgers
|
| Street address |
185 South Orange Ave
|
| City |
Newark |
| State/province |
New Jersey |
| ZIP/Postal code |
07103 |
| Country |
USA |
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| Platform ID |
GPL24676 |
| Series (1) |
| GSE241385 |
CSF single cell transcriptomic changes associated with post-acute sequelae of SARS CoV 2 infection |
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| Relations |
| BioSample |
SAMN37107581 |
| SRA |
SRX21448724 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7728054_H8_raw_feature_bc_matrix.h5 |
13.4 Mb |
(ftp)(http) |
H5 |
SRA Run Selector |
| Raw data are available in SRA |
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