|
| Status |
Public on Sep 12, 2011 |
| Title |
SqCC_54_CGH |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Microdissected lung tumor
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Lung tumor
subtype: Squamous Cell Carcinoma
|
| Growth protocol |
microdissected lung tumor tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Phenol/Chloroform DNA extraction. For the reference DNA, DNA from blood from an anonymous male reference was used.
|
| Label |
Cy3
|
| Label protocol |
Cy3 sample, Cy5 normal male reference
|
| |
|
| Channel 2 |
| Source name |
Normal male (blood DNA)
|
| Organism |
Homo sapiens |
| Characteristics |
reference: Normal male (blood DNA)
|
| Growth protocol |
microdissected lung tumor tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Phenol/Chloroform DNA extraction. For the reference DNA, DNA from blood from an anonymous male reference was used.
|
| Label |
Cy5
|
| Label protocol |
Cy3 sample, Cy5 normal male reference
|
| |
|
| |
| Hybridization protocol |
Please see Lockwood et al 2007 (PMID: 18391978) and Watson et al 2007 (PMID: 17051368)
|
| Scan protocol |
Please see Lockwood et al 2007 (PMID: 18391978) and Watson et al 2007 (PMID: 17051368)
|
| Description |
SqCC_54
|
| Data processing |
Normalized using algorithm by Khojasteh et al (PMID: 16297240)
|
| |
|
| Submission date |
Aug 31, 2011 |
| Last update date |
Sep 12, 2011 |
| Contact name |
Raj Chari |
| E-mail(s) |
rchari@bccrc.ca
|
| Organization name |
BC Cancer Research Centre
|
| Department |
Cancer Genetics and Developmental Biology
|
| Lab |
Wan Lam Lab
|
| Street address |
675 West 10th Avenue
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V5Z 1L3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL14360 |
| Series (2) |
| GSE31798 |
DNA copy number profiles of NSCLC tumors |
| GSE31800 |
DNA copy number and gene expression profiles of resected non-small cell lung cancer tumors |
|
