NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM796 Query DataSets for GSM796
Status Public on Feb 12, 2002
Title CGH_Albertson_GM01524-010220
Sample type genomic
 
Channel 1
Source name Cell line GMM01524
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM01524
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM01524
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM01524">GM01524</a>.
Fibroblast cell line derived from a 19 year old male with growth and mental retardation and peculiar facies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-5,+der(5)ins(5;6)(5pter>5q33:: 6q15>6q25::5q33>5qter)mat
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 0.962232 0.030882 3
2 0
3 -0.158408 0.896013 0.008043 3
4 -0.178651 0.883529 0.003951 3
5 -0.070979 0.951992 0.009594 3
6 0.072569 1.051588 0.000608 2
7 -0.087698 0.941023 0.021256 3
8 0.109953 1.079193 0.008224 3
9 -0.037748 0.974175 0.007999 3
10 -0.056346 0.961697 0.002325 3
11 0.093443 1.066914 0.021086 3
12 -0.100892 0.932456 0.015316 3
13 -0.052844 0.964034 0.012971 3
14 0.002346 1.001627 0.024056 3
15 0.018359 1.012807 0.010362 3
16 -0.093491 0.937252 0.002838 3
17 0.028911 1.020241 0.017229 3
18 -0.125565 0.916645 0.002866 3
19 0.013745 1.009573 0.006231 3
20 -0.07826 0.947199 0.00299 3

Total number of rows: 2463

Table truncated, full table size 78 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap