|
| Status |
Public on Mar 05, 2024 |
| Title |
CB21day old biol replicate1 |
| Sample type |
SRA |
| |
|
| Source name |
Carotid body
|
| Organism |
Rattus norvegicus |
| Characteristics |
tissue: Carotid body
cell line: tissue
cell type: 21day old
genotype: Sprague Dawley
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using the Direct -ZOL- RNA micro prep kit ( Zyme Research #R2060). 1000ng was used for construction of sequencing libraries
RNA libraries for RNA seq were prepared using Illumina TrueSEQ based following manfacturers protocol.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
NP.2A
|
| Data processing |
pseudo aligner: salmon v1.5.2
Assembly: Rnor_6.0_r102
Supplementary files format and content: gene counts in csv format
|
| |
|
| Submission date |
Jan 10, 2024 |
| Last update date |
Mar 05, 2024 |
| Contact name |
Jayasri Nanduri |
| E-mail(s) |
jnanduri@bsd.uchicago.edu
|
| Organization name |
University of Chicago
|
| Street address |
5841 S. Maryland Avenue
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platform ID |
GPL25947 |
| Series (1) |
| GSE252955 |
Transcriptomic analysis indicates a role for oxidative phosphorylation in postnatal development of rat carotid body hypoxic sensitivity |
|
| Relations |
| BioSample |
SAMN39336827 |
| SRA |
SRX23154675 |
