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Sample GSM801668 Query DataSets for GSM801668
Status Public on Oct 20, 2011
Title Fibroblasts P1TRIF-/- IL1B
Sample type RNA
 
Source name Fibroblasts from TRIF deficient patient
Organism Homo sapiens
Characteristics treatment: IL1B
concentration: 20ng/ml
time point: 4hrs
cell type: Fibroblasts
disease state: herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient
Extracted molecule total RNA
Extraction protocol Cells were lysed in RLT + 1% β-Mercaptoethanol, RNA were isolated using Qiagen Rneasy mini kit
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description X5935315006_D.AVG_signal
Data processing The data were normalised using quantile normalisation with in R. PALO (p<0.05 present in at least one) were used to filter the data.
 
Submission date Sep 26, 2011
Last update date Jan 12, 2017
Contact name Elisabeth Israelsson
E-mail(s) elisabeth.israelsson@astrazeneca.com
Organization name AstraZeneca, IMED RIA
Department Translational Biology
Street address Pepparedsleden 1
City Molndal
ZIP/Postal code SE-431 83
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE32390 In vitro responses of PBMC and fibroblasts from patients with TRIF deficiency after TRIF dependent and independent stimuli

Data table header descriptions
ID_REF
VALUE Following background subtraction, the raw signal values extracted with Illumina Beadstudio version 2 software were quantile normalized
X5935315006_D.Detection.Pval

Data table
ID_REF VALUE X5935315006_D.Detection.Pval
ILMN_1343291 13.19818965 0
ILMN_1343295 11.55324339 0
ILMN_1651221 3.730667088 0.2948052
ILMN_1651228 10.80267469 0
ILMN_1651229 5.383693742 0
ILMN_1651232 4.558051726 0.02337662
ILMN_1651237 8.783537983 0
ILMN_1651254 9.255431538 0
ILMN_1651259 5.280892803 0
ILMN_1651262 11.4628906 0
ILMN_1651278 7.475421202 0
ILMN_1651281 3.335086777 0.4688312
ILMN_1651282 4.147586759 0.1324675
ILMN_1651288 4.525906527 0.02857143
ILMN_1651296 5.97779504 0
ILMN_1651315 8.532934233 0
ILMN_1651328 4.861393524 0.003896104
ILMN_1651329 4.40048833 0.05064935
ILMN_1651339 4.494448563 0.03376623
ILMN_1651341 4.722235966 0.009090909

Total number of rows: 27683

Table truncated, full table size 795 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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