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Sample GSM82339 Query DataSets for GSM82339
Status Public on Apr 30, 2007
Title 1252_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12745.9902 150.512 G 132.8298 12825.9902 5785 13467.0527 200 15.95769119 96.5595926 80.4931 80 11.0397 227 150.512
1002 1 839.1927 9.9097 G 9.891 916.1927 990 463.7731 111 11.8882122 92.62869379 76.7542 77 10.4191 122 9.9097
1003 1 0.25 0.003 L 0.8099 82.25 83 12.8914 32 6.383076668 101.5605479 82.467 82 13.0404 188 0.003
1004 1 17.9487 0.2119 G 1.0051 96.9487 95 15.1216 39 7.04672575 96.45300935 79.7222 79 11.6353 148 0.2119
1005 1 1.8837 0.0222 L 0.8496 76.8837 75 10.2724 86 10.46415806 90.49033092 76.9161 75 10.3269 161 0.0222
1006 1 19.6744 0.2323 G 1.0444 94.6744 93 15.1515 43 7.39927721 90.64845905 75.6057 75 10.4323 181 0.2323
1007 1 15.1064 0.1784 L 0.9981 93.1064 95 13.3628 47 7.735777855 93.2870119 78.3132 78 10.1913 188 0.1784
1008 1 12928.3467 152.6654 G 132.3938 13008.3467 5732 13990.7705 200 15.95769119 98.25497715 80.7665 80 12.17 235 152.6654
1009 1 868.1747 10.2519 G 9.5367 949.1747 1051 452.2993 105 11.56244564 99.52870315 81.9699 81 12.3525 172 10.2519
1010 1 795.8384 9.3977 G 9.2197 873.8384 928 448.8129 99 11.22723103 94.77998222 78.7368 78 11.1867 158 9.3977
1011 1 92.5714 1.0931 G 1.808 170.5714 171 32.7408 84 10.34176636 94.34079463 77.6154 78 10.8939 188 1.0931
1012 1 59.08 0.6977 G 1.4717 136.08 139 23.5869 75 9.772049904 92.46507026 77.0714 77 10.31 188 0.6977
1013 1 29.5161 0.3485 G 1.1421 108.5161 111 17.9971 62 8.884866714 95.01595002 78.2582 79 10.6773 188 0.3485
1014 1 25.5556 0.3018 G 1.0982 101.5556 97 22.3065 54 8.291859627 92.47172828 75.6391 76 10.9812 175 0.3018
1015 1 15119.0908 178.535 G 150.8155 15198.0908 9209 15275.4932 224 16.88803291 100.7727643 81.8105 79 14.5152 196 178.535
1016 1 83.7802 0.9893 G 1.7629 157.7802 154 23.2898 91 10.76405144 89.4993169 75.1361 74 10.3329 175 0.9893
1017 1 8.3934 0.0991 L 0.9196 87.3934 86 16.1421 61 8.812923431 95.03548774 78.7549 79 10.6903 106 0.0991
1018 1 8.8611 0.1046 L 0.9231 85.8611 84 11.2723 36 6.770275116 93.01204479 76.8052 77 10.6747 160 0.1046
1019 1 1.8049 0.0213 L 0.8131 78.8049 77 11.0613 82 10.21790791 96.91502252 77.8973 77 13.2767 152 0.0213
1020 1 30.7183 0.3627 G 1.0328 116.7183 118 21.265 71 9.507891655 113.0095772 88.9 86 18.0064 104 0.3627

Total number of rows: 54359

Table truncated, full table size 5859 Kbytes.




Supplementary file Size Download File type/resource
GSM82339.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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