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Sample GSM82350 Query DataSets for GSM82350
Status Public on Apr 30, 2007
Title 1243_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13604.0518 197.8652 G 136.7276 13685.0518 8442 13298.2764 176 14.96964169 100.0898772 81.275 81 12.7266 124 197.8652
1002 1 517.9592 7.5335 G 6.3572 596.9592 642 249.3422 100 11.28379154 93.9030473 79.2102 79 9.9354 182 7.5335
1003 1 0.7024 0.0102 L 0.8408 82.7024 82 13.6659 84 10.34176636 98.35605454 82.8565 82 10.904 217 0.0102
1004 1 5.2115 0.0758 L 0.8719 84.2115 83 12.7767 52 8.136857986 96.58726878 79.2222 79 11.7248 121 0.0758
1005 1 7.1471 0.104 L 0.9082 86.1471 86 9.7109 34 6.579524517 94.85671554 80.6319 79 10.5711 188 0.104
1006 1 29.6667 0.4315 G 1.1313 104.6667 104 12.217 60 8.740387917 92.51867755 75.9613 75 11.6791 187 0.4315
1007 1 62.6364 0.911 G 1.5219 139.6364 138 21.4191 77 9.90148735 91.75059855 78.2692 77 9.8337 188 0.911
1008 1 12565.1348 182.7546 G 126.9729 12647.1348 5930 13082.0342 188 15.47155571 99.60497434 81.0333 82 11.7366 124 182.7546
1009 1 526.8646 7.663 G 6.4629 604.8646 687 263.5195 96 11.05581284 93.5900754 77.6554 78 10.3934 183 7.663
1010 1 410.6111 5.9722 G 5.2357 489.6111 551 207.6096 90 10.70474434 93.51356303 78.4341 79 9.6757 188 5.9722
1011 1 68.8974 1.0021 G 1.6121 142.8974 142 23.7387 78 9.965575218 88.64275199 75.0934 74 9.7618 188 1.0021
1012 1 50.3382 0.7321 G 1.3682 127.3382 128 18.8536 68 9.304853439 93.06870129 77.7747 77 10.7125 188 0.7321
1013 1 31.0299 0.4513 G 1.1809 106.0299 101 20.4902 67 9.236181259 89.78486286 75.9941 75 9.8566 177 0.4513
1014 1 5.5714 0.081 L 0.8925 83.5714 84 13.9127 91 10.76405144 93.63618485 78.5933 78 10.4241 217 0.081
1015 1 13606.8955 197.9066 G 137.5858 13688.8955 6063 14217.2363 215 16.54528618 99.49350858 82.3097 82 11.6623 234 197.9066
1016 1 37 0.5381 G 1.222 117 115 13.3242 73 9.640875816 95.74104745 80.1149 80 10.494 180 0.5381
1017 1 20.1667 0.2933 G 1.0713 98.1667 97 14.2739 66 9.166996002 91.63058266 78.4171 78 9.0871 181 0.2933
1018 1 15.7111 0.2285 L 0.9944 93.7111 96 15.7813 45 7.569397449 94.2411925 78.5714 78 10.8275 188 0.2285
1019 1 7 0.1018 L 0.8873 85 85 14.0885 33 6.482044697 95.79863457 77.092 78 11.8658 180 0.1018
1020 1 24.6415 0.3584 G 1.0818 100.6415 99 15.492 53 8.214724541 93.03359279 75.4766 76 11.3557 132 0.3584

Total number of rows: 54359

Table truncated, full table size 5829 Kbytes.




Supplementary file Size Download File type/resource
GSM82350.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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