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Sample GSM82358 Query DataSets for GSM82358
Status Public on Apr 30, 2007
Title 1599_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14953.4473 201.0405 G 157.0393 15032.4473 6314 16477.5195 145 13.58748436 95.7241341 78.4167 79 11.1494 124 201.0405
1002 1 673.8876 9.06 G 8.4171 747.8876 882 411.0653 89 10.64510822 88.85305053 74.5876 74 9.902 183 9.06
1003 1 6.5851 0.0885 L 0.9131 82.5851 81 12.179 94 10.94004154 90.44361525 76.162 76 9.6291 224 0.0885
1004 1 21.6522 0.2911 G 1.0612 95.6522 96 14.1486 46 7.653039932 90.14001086 74.6667 74 10.76 186 0.2911
1005 1 16.9714 0.2282 G 1.0196 90.9714 91 11.6066 35 6.675580978 89.22366221 75.4667 74 10.1491 186 0.2282
1006 1 12.175 0.1637 L 0.9716 89.175 91 15.4222 40 7.136496544 91.78181484 77.3006 77 9.8545 179 0.1637
1007 1 19.825 0.2665 G 1.0141 94.825 94 14.0515 40 7.136496544 93.5026237 76.8889 75 12.3351 186 0.2665
1008 1 16098.0127 216.4285 G 167.4467 16177.0127 8345 16930.0176 154 14.00281715 96.60992181 79.5833 79 11.7399 124 216.4285
1009 1 277.2644 3.7277 G 3.8936 354.2644 394 130.4396 87 10.52482033 90.98614069 77.0977 77 9.3241 180 3.7277
1010 1 632.4651 8.5031 G 7.7807 708.4651 850 346.9659 86 10.46415806 91.05468022 75.4972 76 10.0365 185 8.5031
1011 1 104.2051 1.401 G 1.9984 178.2051 186 44.0295 78 9.965575218 89.17493958 73.9945 74 10.1166 188 1.401
1012 1 260.1646 3.4978 G 3.7837 334.1646 377 132.9283 79 10.02925301 88.31594348 73.6758 74 9.544 188 3.4978
1013 1 76.5946 1.0298 G 1.6876 150.5946 158 32.5177 74 9.706685066 89.23623909 74.1099 74 10.1575 188 1.0298
1014 1 35.5942 0.4785 G 1.2309 110.5942 110 13.9589 69 9.373021126 89.84548803 74.8516 75 9.897 188 0.4785
1015 1 15281.3184 205.4485 G 156.5254 15363.3184 7138 16486.8164 137 13.20733929 98.15222503 81.1167 82 10.7682 124 205.4485
1016 1 44.0179 0.5918 G 1.3102 122.0179 117 19.9924 56 8.444016457 93.12860375 78.9066 78 10.0857 188 0.5918
1017 1 13.2029 0.1775 L 0.9542 94.2029 95 14.6876 69 9.373021126 98.720213 81.8469 81 11.8135 102 0.1775
1018 1 20.0865 0.2701 G 1.0371 98.0865 96 21.6747 106 11.61737442 94.57386291 79.3053 78 11.0492 196 0.2701
1019 1 13.2182 0.1777 L 0.9708 93.2182 90 17.4217 55 8.368284225 96.02381676 80.2137 80 10.6825 121 0.1777
1020 1 9.5526 0.1284 L 0.9301 84.5526 83 13.7739 38 6.955796242 90.90640559 76.2743 75 10.6043 181 0.1284

Total number of rows: 54359

Table truncated, full table size 5809 Kbytes.




Supplementary file Size Download File type/resource
GSM82358.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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