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Sample GSM82363 Query DataSets for GSM82363
Status Public on Apr 30, 2007
Title 1844_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15659.6719 222.2341 G 166.9875 15738.6719 8460 16548.9082 139 13.30339432 94.2505799 79.3132 79 10.1671 188 222.2341
1002 1 863.1136 12.2489 G 10.255 940.1136 1147 500.7852 88 10.58513451 91.67388934 77.1329 77 9.7826 179 12.2489
1003 1 3.2353 0.0459 L 0.8754 78.2353 78 13.0768 34 6.579524517 89.36720504 76.0419 75 9.5781 173 0.0459
1004 1 26.3617 0.3741 G 1.1354 102.3617 102 10.8165 47 7.735777855 90.15363698 76.5879 76 9.4358 188 0.3741
1005 1 15.3696 0.2181 L 0.9967 90.3696 92 12.8069 46 7.653039932 90.67008261 75.8407 75 10.4467 188 0.2181
1006 1 22.6579 0.3215 G 1.0809 99.6579 98 14.2705 38 6.955796242 92.20163655 77.8846 77 10.1344 188 0.3215
1007 1 19.8537 0.2818 G 1.0564 95.8537 97 12.4833 41 7.225152016 90.73389465 76.989 76 9.8226 188 0.2818
1008 1 16022.8291 227.3878 G 168.6071 16103.8291 6711 17428.0703 166 14.53814888 95.51100361 80.6167 81 9.674 124 227.3878
1009 1 380.9773 5.4066 G 4.9771 457.9773 539 191.8593 88 10.58513451 92.01598415 76.743 77 10.0107 185 5.4066
1010 1 754.6667 10.7098 G 9.1596 830.6667 948 445.118 90 10.70474434 90.68837703 76.4774 76 9.7923 161 10.7098
1011 1 89.4935 1.27 G 1.8489 163.4935 163 34.1816 77 9.90148735 88.42737098 75.663 74 9.6182 187 1.27
1012 1 110.7183 1.5713 G 2.0526 185.7183 197 44.1939 71 9.507891655 90.47925163 76.2912 75 10.3195 188 1.5713
1013 1 58.0563 0.8239 G 1.4908 135.0563 135 22.3575 71 9.507891655 90.59288958 76.8626 77 9.0619 188 0.8239
1014 1 27.0545 0.3839 G 1.14 102.0545 104 10.8451 55 8.368284225 89.52036889 75.7198 75 9.6802 188 0.3839
1015 1 14895.25 211.3858 G 156.4797 14974.25 6031 16865.1172 142 13.44618988 95.69451784 79.2833 79 11.1297 124 211.3858
1016 1 10.5833 0.1502 L 0.9431 87.5833 90 18.239 48 7.817640305 92.86638954 77.2857 77 10.5776 188 0.1502
1017 1 15.1053 0.2144 L 0.9977 92.1053 92 14.3725 38 6.955796242 92.31505299 77.6648 77 10.21 188 0.2144
1018 1 19.3871 0.2751 G 1.0448 95.3871 93 15.7207 31 6.282549381 91.29406406 76.5714 76 10.196 188 0.2751
1019 1 14.775 0.2097 L 0.9907 92.775 94 10.7854 40 7.136496544 93.64496697 78.6923 78 10.43 188 0.2097
1020 1 35.561 0.5047 G 1.1897 114.561 111 13.9565 41 7.225152016 96.29169535 80 79 11.5278 188 0.5047

Total number of rows: 54359

Table truncated, full table size 5811 Kbytes.




Supplementary file Size Download File type/resource
GSM82363.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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