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Sample GSM82372 Query DataSets for GSM82372
Status Public on Apr 30, 2007
Title 1243_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13574.9141 222.9272 G 141.5465 13654.9141 4211 15342.208 154 14.00281715 96.46947228 80.325 80 10.9796 124 222.9272
1002 1 539.2747 8.856 G 6.6023 616.2747 717 300.6134 91 10.76405144 93.34268285 76.3626 77 10.8951 188 8.856
1003 1 23.4286 0.3847 G 1.0723 103.4286 75 69.7736 35 6.675580978 96.45873896 80 80 10.9725 188 0.3847
1004 1 0.4483 0.0074 L 0.8315 78.4483 76 9.9155 29 6.076507568 94.34514311 78.6264 78 10.8968 188 0.0074
1005 1 -3.2188 -0.0529 L 0.7913 73.7813 71 11.4721 32 6.383076668 93.2444869 76.5385 77 10.8297 188 -0.0529
1006 1 27.8182 0.4568 G 1.1407 104.8182 102 14.3325 55 8.368284225 91.8901121 77.2308 77 9.9267 188 0.4568
1007 1 26.1455 0.4294 G 1.0733 109.1455 109 12.6756 55 8.368284225 101.6879907 82.8297 83 12.4587 188 0.4294
1008 1 15958.2295 262.066 G 157.067 16042.2295 9328 16181.8711 163 14.40618038 102.1362478 84.3917 84 12.0908 124 262.066
1009 1 458.3913 7.5277 G 5.699 537.3913 572 219.7529 92 10.82303238 94.29605913 78.9156 79 10.1974 160 7.5277
1010 1 554.1023 9.0995 G 6.6984 633.1023 738 287.8289 88 10.58513451 94.51547732 79.1593 79 10.3436 188 9.0995
1011 1 52.6316 0.8643 G 1.3705 133.6316 132 22.5172 76 9.836981773 97.50534826 82.3862 81 11.0036 149 0.8643
1012 1 48.7385 0.8004 G 1.3456 128.7385 126 17.8647 65 9.097283363 95.67087002 80.6978 80 10.4472 188 0.8004
1013 1 28.6842 0.4711 G 1.1366 106.6842 103 14.842 57 8.519076347 93.85861428 78.7802 78 10.5724 188 0.4711
1014 1 15.6531 0.2571 G 1.0213 92.6531 92 10.5802 49 7.898653984 90.71738862 77.9121 77 9.1449 188 0.2571
1015 1 14773.5635 242.6114 G 152.931 14852.5635 8020 15229.3008 135 13.1105814 97.11935799 81.0385 79 12.0796 188 242.6114
1016 1 33.06 0.5429 G 1.1763 117.06 115 14.3672 50 7.978845596 99.51762214 83.9176 84 10.3451 188 0.5429
1017 1 8.2577 0.1356 L 0.9373 90.2577 89 13.3225 97 11.11324596 96.29432407 82.8229 82 9.5296 200 0.1356
1018 1 18.3409 0.3012 G 1.0251 100.3409 103 14.7231 44 7.484820843 97.88073401 82.9658 82 10.5872 152 0.3012
1019 1 -2.2245 -0.0365 L 0.7676 86.7755 85 14.689 49 7.898653984 113.0432985 91.225 89 16.0289 124 -0.0365
1020 1 32.5366 0.5343 C 1.0735 132.5366 128 25.543 41 7.225152016 123.4629839 101.2747 100 15.642 188 0.5343

Total number of rows: 54359

Table truncated, full table size 5803 Kbytes.




Supplementary file Size Download File type/resource
GSM82372.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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