|
| Status |
Public on Sep 04, 2012 |
| Title |
Hu_4598_hi_43 |
| Sample type |
SRA |
| |
|
| Source name |
human, hippocampus
|
| Organism |
Homo sapiens |
| Characteristics |
brain region: hippocampus
isolate: 4598
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extracted using Qiagen Rneasy kit; library made using Illumina DpnII protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Reads were aligned to the genome and RefSeq using bfast. Up to one mismatch was allowed. Only reads that aligned to one genomic location were used.
|
| |
|
| Submission date |
Nov 09, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Genevieve Konopka |
| E-mail(s) |
gena@alum.mit.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Department |
Neuroscience
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390-9111 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (2) |
| GSE33587 |
Human-specific patterns of gene expression in the brain (RNA-Seq) |
| GSE33588 |
Human-specific patterns of gene expression in the brain |
|
| Relations |
| SRA |
SRX105052 |
| BioSample |
SAMN00750750 |
