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Sample GSM833242 Query DataSets for GSM833242
Status Public on Nov 16, 2011
Title Podocyte cells RPMI Replicate 1
Sample type RNA
 
Source name Podocyte cells RPMI
Organism Mus musculus
Characteristics cell type: Primary podocyte cell
media: RPMI
genetic background: mixed 75% Sv129
Treatment protocol Changing the medium 1-2 times weekly
Growth protocol Cultivated capsulated or decapsulated glomeruli for 7-14 days in EGM-MV Medium
Extracted molecule total RNA
Extraction protocol trypsinisation the cells, resuspending the cells in RPMI
Label biotin
Label protocol Treating the suspended cells for 1 minute at 37°C with 2mM fluorescein di-ß-Galactopyranoside
 
Hybridization protocol Samples were diluted 10-fold with RPMI-1640, incubate for 30-60 minutes on ice
Scan protocol Affymetrix standard scan conditions
Description FACs sorted cells from transgenic mice
Data processing JMP Genomics 4.0, RMA background correction, quantile normalization
 
Submission date Nov 15, 2011
Last update date Nov 29, 2011
Contact name Gregor Warsow
Organization name University of Rostock
Department Medical Department
Lab IBIMA
Street address Ernst-Heydemann-Str. 8
City Rostock
ZIP/Postal code 18057
Country Germany
 
Platform ID GPL14866
Series (1)
GSE33714 Primary cultures of glomerular parietal epithelial cells or podocytes with proven origin

Data table header descriptions
ID_REF
VALUE log 2 RMA background correction, quantile normalization

Data table
ID_REF VALUE
ENSMUSG00000000001_at 9.927669
ENSMUSG00000000003_at 4.478271
ENSMUSG00000000028_at 6.729126
ENSMUSG00000000031_at 5.626552
ENSMUSG00000000037_at 5.159691
ENSMUSG00000000049_at 5.226288
ENSMUSG00000000056_at 7.734547
ENSMUSG00000000058_at 9.147892
ENSMUSG00000000078_at 11.001720
ENSMUSG00000000085_at 9.315815
ENSMUSG00000000088_at 10.608770
ENSMUSG00000000093_at 6.281529
ENSMUSG00000000094_at 6.187286
ENSMUSG00000000103_at 4.577582
ENSMUSG00000000120_at 6.355334
ENSMUSG00000000125_at 5.361953
ENSMUSG00000000126_at 7.230544
ENSMUSG00000000127_at 8.706182
ENSMUSG00000000131_at 11.016410
ENSMUSG00000000134_at 9.638672

Total number of rows: 22215

Table truncated, full table size 674 Kbytes.




Supplementary file Size Download File type/resource
GSM833242_Pod_2_RPMI.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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