|
Status |
Public on Aug 15, 2012 |
Title |
Down syndrome with Atrial Septal Defect 02-247 |
Sample type |
RNA |
|
|
Source name |
lymphoblastoid cell line
|
Organism |
Homo sapiens |
Characteristics |
gender: Male age (y): 5 karyotype: Trisomic 21 cell type: lymphoblastoid cell line phenotype: Down syndrome Down syndrome with Atrial Septal Defect
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Macherey-Nagel RNAII mini-kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 3
|
Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
|
|
|
Submission date |
Dec 14, 2011 |
Last update date |
Aug 15, 2012 |
Contact name |
Luce Dauphinot |
E-mail(s) |
luce.dauphinot@upmc.fr
|
Phone |
33 1 57274518
|
Organization name |
INSERM U1127-CNRS UMR7225-UPMC
|
Department |
ICM
|
Lab |
Alzheimer and Prions Disease team
|
Street address |
47 boulevard de l'hôpital
|
City |
Paris |
ZIP/Postal code |
75013 |
Country |
France |
|
|
Platform ID |
GPL6102 |
Series (2) |
GSE34457 |
Molecular Signatures of cardiac defects in Down syndrome lymphoblastoid cell lines (congenital heart disease) |
GSE34459 |
Molecular Signatures of cardiac defects in Down syndrome lymphoblastoid cell lines |
|