|
| Status |
Public on Mar 01, 2013 |
| Title |
FS001-402604 vs. FS001-ref |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
FS001-IH
|
| Organism |
Canis lupus familiaris |
| Characteristics |
strain or line: Individual-402604
tissue: Liver
genetic_modification: intrahepatic portosystemic shunts
patient_id: 402604
disease: IH
recovery (recovered = 1, non-recovered = 0): 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA isolation using Trizol v1.0 (tissue sections)
|
| Label |
Cy5
|
| Label protocol |
robot amplification and labeling v1.0
|
| |
|
| Channel 2 |
| Source name |
FS001-refpool
|
| Organism |
Canis lupus familiaris |
| Characteristics |
strain or line: Pool of 2 healthy individuals
tissue: Liver
genetic_modification: FS001-refpool
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA isolation using Trizol v1.0 (tissue sections)
|
| Label |
Cy3
|
| Label protocol |
robot amplification and labeling v1.0
|
| |
|
| |
| Hybridization protocol |
Tecan HS4800 hybridization
|
| Scan protocol |
scanning of slides using Agilent G256BA
Imagene feature extraction
|
| Data processing |
genes, no bg corr, hybset spec. dye corr
|
| |
|
| Submission date |
Jun 28, 2012 |
| Last update date |
Sep 13, 2017 |
| Contact name |
Marian Groot Koerkamp |
| Organization name |
Princess Maxima Center for Pediatric Oncology
|
| Department |
Research
|
| Lab |
Drostlab
|
| Street address |
Heidelberglaan 25
|
| City |
Utrecht |
| State/province |
Utrecht |
| ZIP/Postal code |
3584 CS |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL15184 |
| Series (1) |
| GSE39005 |
FS001: Aberrant gene expression in dogs with portosystemic shunts |
|
