|
| Status |
Public on Jul 19, 2012 |
| Title |
GIS-Ruan_ChiaPet_K562_Pol2 |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChiaPet
datatype description: Chromatin Interaction Paired-End Tags
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
labexpid: CHK019M_L2_lane13,CHK019M_L2_lane24
replicate: 1,2
cell lineage: mesoderm
cell sex: F
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
labexpid: CHK019M_L2_lane13
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisChiaPet
library_strategy: ChIP-Seq followed by ligation
|
| |
|
| Library strategy |
ChIA-PET |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisChiaPet
|
| |
|
| Submission date |
Jul 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE39495 |
Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan |
|
| Relations |
| Reanalyzed by |
GSE80795 |
| SRA |
SRX160883 |
| BioSample |
SAMN01091745 |
| Named Annotation |
GSM970213_hg19_wgEncodeGisChiaPetK562Pol2SigRep1.bigWig |
| Named Annotation |
GSM970213_hg19_wgEncodeGisChiaPetK562Pol2SigRep2.bigWig |
