GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: ASTRO III 587_e1_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AA
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1265.9192
P
0.004017
AFFX-BioB-M_at
2254.215
P
0.000258
AFFX-BioB-3_at
929.06836
P
0.007620
AFFX-BioC-5_at
3289.1501
P
0.000297
AFFX-BioC-3_at
2924.9963
P
0.000095
AFFX-BioDn-5_at
2738.2305
P
0.000052
AFFX-BioDn-3_at
19607.123
P
0.000297
AFFX-CreX-5_at
30041.613
P
0.000044
AFFX-CreX-3_at
42134.59
P
0.000044
AFFX-DapX-5_at
21.561392
A
0.645547
AFFX-DapX-M_at
238.00667
A
0.156732
AFFX-DapX-3_at
104.75664
A
0.749204
AFFX-LysX-5_at
15.148904
A
0.724854
AFFX-LysX-M_at
41.684265
A
0.672921
AFFX-LysX-3_at
261.56207
A
0.116113
AFFX-PheX-5_at
23.418688
A
0.891021
AFFX-PheX-M_at
34.826363
A
0.860518
AFFX-PheX-3_at
58.46345
A
0.937071
AFFX-ThrX-5_at
28.043642
A
0.712257
AFFX-ThrX-M_at
35.41593
A
0.631562
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99496.CEL.gz
3.5 Mb
(ftp) (http) CEL
