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Sample GSM995535 Query DataSets for GSM995535
Status Public on Aug 31, 2012
Title PSU_RnaSeq_FVLstem_paired-end (superseded by GSE90208)
Sample type SRA
 
Source name FVLstem
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: FVLstem
cell organism: mouse
cell description: Friend virus infected murine CD34+,CD133+,Kit+,Sca1+ Leukemia stem cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL
cell sex: B
treatment: None
treatment description: No special treatment or protocol applies
labexpid: paired-end
age: adult-10-12wks
age description: Adult between 8-10 weeks #PROVISIONAL
labexpid: paired-end
readtype: 2x99D
readtype description: Paired 99 nt directed reads
replicate: 1
strain: BALB/cJ
strain description: A common inbred strain of laboratory mouse. #PROVISIONAL
Biomaterial provider Paulson Lab
Treatment protocol None
Growth protocol FVLstem_Hardison_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description ****************************
GSM995535 record metadata submitted on Aug 31 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90208
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
 
Submission date Aug 31, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE40522 ENCODE PSU Hardison RnaSeq
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Reanalyzed by GSE80797
Superseded by GSE90208
SRA SRX181761
BioSample SAMN01141829
Named Annotation GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dMinusRawRep1.bigWig
Named Annotation GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dMinusRawRep2.bigWig
Named Annotation GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dPlusRawRep1.bigWig
Named Annotation GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dMinusRawRep1.bigWig 42.3 Mb (ftp)(http) BIGWIG
GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dMinusRawRep2.bigWig 30.3 Mb (ftp)(http) BIGWIG
GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dPlusRawRep1.bigWig 42.4 Mb (ftp)(http) BIGWIG
GSM995535_mm9_wgEncodePsuRnaSeqFvlsBAdult810wksBalbcjR2x99dPlusRawRep2.bigWig 30.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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