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Status
Public on Mar 08, 2006
Title
brain, Left Parietal Lobe: Extract41_le2
Sample type
RNA
Source name
brain, Left Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3397.4321
P
0.002556
AFFX-BioB-M_at
5084.902
P
0.000509
AFFX-BioB-3_at
3475.3176
P
0.007620
AFFX-BioC-5_at
10712.077
P
0.000127
AFFX-BioC-3_at
8409.855
P
0.000169
AFFX-BioDn-5_at
7577.485
P
0.000390
AFFX-BioDn-3_at
52137.457
P
0.000258
AFFX-CreX-5_at
103883.516
P
0.000044
AFFX-CreX-3_at
174137.84
P
0.000044
AFFX-DapX-5_at
193.77852
A
0.368438
AFFX-DapX-M_at
507.68466
A
0.205732
AFFX-DapX-3_at
123.96802
A
0.783476
AFFX-LysX-5_at
464.14523
A
0.300606
AFFX-LysX-M_at
325.44778
A
0.617401
AFFX-LysX-3_at
301.54596
A
0.340661
AFFX-PheX-5_at
21.46126
A
0.966323
AFFX-PheX-M_at
36.32071
A
0.957038
AFFX-PheX-3_at
231.82283
A
0.737173
AFFX-ThrX-5_at
117.26206
A
0.824672
AFFX-ThrX-M_at
138.69162
A
0.794268
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99571.CEL.gz
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