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    LINC00622 long intergenic non-protein coding RNA 622 [ Homo sapiens (human) ]

    Gene ID: 644242, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC00622provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 622provided by HGNC
    Primary source
    HGNC:HGNC:44251
    See related
    Ensembl:ENSG00000260941 AllianceGenome:HGNC:44251
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC00622 in Genome Data Viewer
    Location:
    1p12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (119597702..119599291, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (119610905..119612494, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (120140325..120141914, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 33 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:120147336-120148535 Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5 Neighboring gene MPRA-validated peak396 silencer Neighboring gene zinc finger protein 697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1246 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:120190306-120190469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1247 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:120190885-120191725

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • FLJ41173

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036540.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI791995, AK123168, BC015390, BQ433915
      Related
      ENST00000562811.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      119597702..119599291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      119610905..119612494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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