Doc2g double C2-like domains, gamma [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Doc2gprovided by RGD
Official Full Name: double C2-like domains, gammaprovided by RGD
Primary source: RGD:1307473
See related: Ensembl:ENSRNOG00000018029 AllianceGenome:RGD:1307473
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Doc2gp
Summary: Predicted to enable metal ion binding activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 184.2), Muscle (RPKM 22.8) and 6 other tissues See more
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Genomic context

Location:: 1q43

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (210724868..210729352)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (201295377..201299867)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (219249253..219253790)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in exocytosis	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of calcium ion-dependent exocytosis	IBA Inferred from Biological aspect of Ancestor more info
involved_in spontaneous neurotransmitter secretion	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in presynapse	IEA Inferred from Electronic Annotation more info
is_active_in synapse	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: double C2-like domain-containing protein gamma

Names: double C2, gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001011937.1 → NP_001011937.1 double C2-like domain-containing protein gamma

See identical proteins and their annotated locations for NP_001011937.1

Status: PROVISIONAL

Source sequence(s)

BC083779

UniProtKB/TrEMBL

A6HYQ9, A6HYR0, F7ES77, Q5XIA7

Related

ENSRNOP00000024353.4, ENSRNOT00000024353.6

Conserved Domains (2) summary

cd04035
Location:84 → 209

C2A_Rabphilin_Doc2; C2 domain first repeat present in Rabphilin and Double C2 domain

cl14603
Location:246 → 378

C2; C2 domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

210724868..210729352

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006230735.5 → XP_006230797.1 double C2-like domain-containing protein gamma isoform X1

UniProtKB/TrEMBL

A6HYR0

Conserved Domains (2) summary

cd04035
Location:84 → 211

C2A_Rabphilin_Doc2; C2 domain first repeat present in Rabphilin and Double C2 domain

cl14603
Location:248 → 380

C2; C2 domain