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    Gm57858 gene model 57858 [ Mus musculus (house mouse) ]

    Gene ID: 241943, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Gm57858provided by MGI
    Official Full Name
    gene model 57858provided by MGI
    Primary source
    MGI:MGI:2681852
    See related
    Ensembl:ENSMUSG00000047696 AllianceGenome:MGI:2681852
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc144b
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm57858 in Genome Data Viewer
    Location:
    3 B; 3 17.41 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (36061396..36107676, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (36007247..36053547, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene defective in cullin neddylation 1 domain containing 1 Neighboring gene predicted gene 15952 Neighboring gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) Neighboring gene STARR-positive B cell enhancer ABC_E650 Neighboring gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E3429 Neighboring gene acyl-Coenzyme A dehydrogenase family, member 9 Neighboring gene STARR-seq mESC enhancer starr_07416 Neighboring gene STARR-seq mESC enhancer starr_07417 Neighboring gene predicted gene, 54173

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC58791

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain containing 144B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424490.1 → NP_001411419.1  coiled-coil domain containing 144B isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC116677, AC158934
      UniProtKB/TrEMBL
      Q80W27

    2. NM_178418.5 → NP_848505.2  coiled-coil domain containing 144B isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC116677, AC158934
      Consensus CDS
      CCDS38415.1
      UniProtKB/TrEMBL
      E9PVZ3, Q80W27
      Related
      ENSMUSP00000142910.2, ENSMUST00000200469.5
      Conserved Domains (2) summary
      COG1196
      Location:45 → 301
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12001
      Location:382 → 484
      DUF3496; Domain of unknown function (DUF3496)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      36061396..36107676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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