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    LINC00898 long intergenic non-protein coding RNA 898 [ Homo sapiens (human) ]

    Gene ID: 400932, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC00898provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 898provided by HGNC
    Primary source
    HGNC:HGNC:48581
    See related
    Ensembl:ENSG00000205634 AllianceGenome:HGNC:48581
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

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    See LINC00898 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (47621043..47631569, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (48112282..48122803, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (48016792..48027318, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47765496-47766695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47771462-47771962 Neighboring gene uncharacterized LOC339685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47803821-47804321 Neighboring gene Sharpr-MPRA regulatory region 13395 Neighboring gene long intergenic non-protein coding RNA 1644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47945374-47946198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47954815-47955315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47965246-47965746 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47983860-47985059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48021971-48022470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48024594-48025473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48025474-48026352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:48055109-48055612 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:48055613-48056116 Neighboring gene Sharpr-MPRA regulatory region 4711 Neighboring gene epigenetically induced MYC interacting lncRNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr22:48123351-48123882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48135325-48135934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48171821-48172322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48172323-48172822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48209585-48210084 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:48260220-48260392 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:48268308-48269507 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:48279628-48280827 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:48363686-48363861 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48438360-48438860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48438861-48439361 Neighboring gene uncharacterized LOC124905150

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • FLJ46257

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033377.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL117329, Z83854
      Related
      ENST00000380990.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      47621043..47631569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      48112282..48122803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001693.1: Suppressed sequence

      Description
      NM_001001693.1: This RefSeq was permanently suppressed because currently sufficient data to support the encoded protein do not exist and the transcript is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

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