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    CLEC20A C-type lectin domain containing 20A [ Homo sapiens (human) ]

    Gene ID: 400797, updated on 5-Mar-2024

    Summary

    Official Symbol
    CLEC20Aprovided by HGNC
    Official Full Name
    C-type lectin domain containing 20Aprovided by HGNC
    Primary source
    HGNC:HGNC:34521
    See related
    Ensembl:ENSG00000188585 AllianceGenome:HGNC:34521
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00083; NCRNA00083
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis (RPKM 2.0), lymph node (RPKM 0.7) and 14 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See CLEC20A in Genome Data Viewer
    Location:
    1q25.2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (178478792..178499623, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177833333..177854346, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (178448375..178466099, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene uncharacterized LOC105371629 Neighboring gene NANOG hESC enhancer GRCh37_chr1:178313926-178314494 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:178386599-178387798 Neighboring gene ribosomal protein S14 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:178452792-178452968 Neighboring gene MPRA-validated peak476 silencer Neighboring gene uncharacterized LOC101928866 Neighboring gene negCOR silencer S4 Neighboring gene testis expressed 35

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    putative C-type lectin domain family 20 member A
    Names
    C-type lectin domain family 20 member A
    long intergenic non-protein coding RNA 83

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395331.1NP_001382260.1  putative C-type lectin domain family 20 member A precursor

      Status: VALIDATED

      Source sequence(s)
      AL035702, KF455100
      Consensus CDS
      CCDS91118.1
      UniProtKB/Swiss-Prot
      A0A1B0GWE9, Q6ZU45
      Related
      ENSP00000490899.1, ENST00000623247.3
      Conserved Domains (2) summary
      cd03602
      Location:22132
      CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
      cl02432
      Location:162275
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      178478792..178499623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035861181.2XP_035717074.1  putative C-type lectin domain family 20 member A isoform X2

      Conserved Domains (2) summary
      cd03602
      Location:69179
      CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
      cl02432
      Location:209322
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    2. XM_047420517.1XP_047276473.1  putative C-type lectin domain family 20 member A isoform X7

    3. XM_047420506.1XP_047276462.1  putative C-type lectin domain family 20 member A isoform X6

    4. XM_047420496.1XP_047276452.1  putative C-type lectin domain family 20 member A isoform X1

    5. XM_047420505.1XP_047276461.1  putative C-type lectin domain family 20 member A isoform X5

    6. XM_047420503.1XP_047276459.1  putative C-type lectin domain family 20 member A isoform X4

    7. XM_047420502.1XP_047276458.1  putative C-type lectin domain family 20 member A isoform X3

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      177833333..177854346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054336584.1XP_054192559.1  putative C-type lectin domain family 20 member A isoform X2

    2. XM_054336589.1XP_054192564.1  putative C-type lectin domain family 20 member A isoform X7

    3. XM_054336588.1XP_054192563.1  putative C-type lectin domain family 20 member A isoform X6

    4. XM_054336583.1XP_054192558.1  putative C-type lectin domain family 20 member A isoform X1

    5. XM_054336587.1XP_054192562.1  putative C-type lectin domain family 20 member A isoform X5

    6. XM_054336586.1XP_054192561.1  putative C-type lectin domain family 20 member A isoform X4

    7. XM_054336585.1XP_054192560.1  putative C-type lectin domain family 20 member A isoform X3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001689.1: Suppressed sequence

      Description
      NM_001001689.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.