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    zc3h11a zinc finger CCCH-type containing 11A [ Danio rerio (zebrafish) ]

    Gene ID: 324551, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zc3h11aprovided by ZNC
    Official Full Name
    zinc finger CCCH-type containing 11Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3272
    See related
    Ensembl:ENSDARG00000009754 AllianceGenome:ZFIN:ZDB-GENE-030131-3272
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc32e10; zgc:73328; wu:fc32e10
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See zc3h11a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (24034328..24044586)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (23796472..23806729)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene chitinase, acidic.3 Neighboring gene oviductal glycoprotein 1 Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III a Neighboring gene tribbles pseudokinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 11A
    Names
    zinc finger CCCH type containing 11A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199686.2 → NP_955980.2  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_955980.2

      Status: VALIDATED

      Source sequence(s)
      CU571319
      UniProtKB/TrEMBL
      A0A8M2BGM4, F1QNW1
      Related
      ENSDARP00000105424.1, ENSDART00000128309.3
      Conserved Domains (2) summary
      smart00356
      Location:7 → 28
      ZnF_C3H1; zinc finger
      pfam15663
      Location:2 → 111
      zf-CCCH_3; Zinc-finger containing family

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      24034328..24044586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169254.4 → XP_005169311.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_005169311.1

      UniProtKB/TrEMBL
      A0A8M2BGM4, F1QNW1
      Conserved Domains (2) summary
      smart00356
      Location:7 → 28
      ZnF_C3H1; zinc finger
      pfam15663
      Location:2 → 111
      zf-CCCH_3; Zinc-finger containing family

    2. XM_005169256.4 → XP_005169313.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_005169313.1

      UniProtKB/TrEMBL
      A0A8M2BGM4, F1QNW1
      Conserved Domains (2) summary
      smart00356
      Location:7 → 28
      ZnF_C3H1; zinc finger
      pfam15663
      Location:2 → 111
      zf-CCCH_3; Zinc-finger containing family
    Nucleotide Protein Strain
    Heading Accession and Version

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