zgc:112083 zgc:112083 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:112083provided by ZNC
Official Full Name: zgc:112083provided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-284
See related: Ensembl:ENSDARG00000037405 AllianceGenome:ZFIN:ZDB-GENE-050417-284
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7144560; wu:fb73f06
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Orthologous to human HINFP (histone H4 transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

See zgc:112083 in Genome Data Viewer

Location:: chromosome: 15

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (19990052..20003868)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (20054341..20068140)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in anatomical structure development	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein; uncharacterized protein LOC550461

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017764.1 → NP_001017764.1 uncharacterized protein LOC550461

See identical proteins and their annotated locations for NP_001017764.1

Status: PREDICTED

Source sequence(s)

BC093191

UniProtKB/TrEMBL

A0A2R8Q5E1, F6NGS7, Q567F5

Related

ENSDARP00000054427.3, ENSDART00000054428.5

Conserved Domains (3) summary

COG5236
Location:234 → 356

COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

sd00017
Location:219 → 239

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:302 → 320

ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007126.7 Reference GRCz11 Primary Assembly

Range

19990052..20003868

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021481408.1 → XP_021337083.1 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein isoform X1

UniProtKB/TrEMBL

A0A2R8Q5E1, F6NGS7, Q567F5

Conserved Domains (3) summary

COG5236
Location:234 → 356

COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

sd00017
Location:219 → 239

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:302 → 320

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_009291649.3 → XP_009289924.1 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein isoform X2

UniProtKB/TrEMBL

A0A8M3B114

Conserved Domains (3) summary

COG5236
Location:94 → 216

COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

sd00017
Location:79 → 99

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:162 → 180

ZF_C2H2; C2H2 Zn finger [structural motif]