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    Fam171a2 family with sequence similarity 171, member A2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100361389, updated on 10-May-2024

    Summary

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    Official Symbol
    Fam171a2provided by RGD
    Official Full Name
    family with sequence similarity 171, member A2provided by RGD
    Primary source
    RGD:1307966
    See related
    Ensembl:ENSRNOG00000021041 AllianceGenome:RGD:1307966
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307966
    Summary
    Predicted to be integral component of membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 63.2), Lung (RPKM 40.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam171a2 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (87894049..87904213, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (87393888..87404051, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (90383111..90393476, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 39 Neighboring gene granulin precursor Neighboring gene integrin subunit alpha 2b Neighboring gene uncharacterized LOC134480882 Neighboring gene G patch domain containing 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    family with sequence similarity 171, member A2; protein FAM171A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      87894049..87904213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006247473.5 → XP_006247535.1  protein FAM171A2 isoform X2

      UniProtKB/TrEMBL
      A6HJL0
      Conserved Domains (1) summary
      pfam10577
      Location:41 → 813
      UPF0560; uncharacterized protein family UPF0560

    2. XM_002727821.7 → XP_002727867.2  protein FAM171A2 isoform X1

      UniProtKB/TrEMBL
      A6HJL0, D3ZT47
      Related
      ENSRNOP00000028563.6
      Conserved Domains (1) summary
      pfam10577
      Location:41 → 820
      UPF0560; uncharacterized protein family UPF0560

    3. XM_039087758.2 → XP_038943686.1  protein FAM171A2 isoform X3

      Conserved Domains (1) summary
      pfam10577
      Location:1 → 636
      UPF0560; Uncharacterized protein family UPF0560

    4. XM_039087759.2 → XP_038943687.1  protein FAM171A2 isoform X3

      Conserved Domains (1) summary
      pfam10577
      Location:1 → 636
      UPF0560; Uncharacterized protein family UPF0560
    Nucleotide Protein Strain
    Heading Accession and Version

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