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    rnf17 ring finger protein 17 [ Danio rerio (zebrafish) ]

    Gene ID: 334519, updated on 27-Mar-2024

    Summary

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    Official Symbol
    rnf17provided by ZNC
    Official Full Name
    ring finger protein 17provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6451
    See related
    Ensembl:ENSDARG00000056387 AllianceGenome:ZFIN:ZDB-GENE-030131-6451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    TDRD4; im:7147535; wu:fj98c04
    Summary
    Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See rnf17 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (29548542..29571230)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29737822..29760484)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene ferredoxin 1 Neighboring gene Rho GTPase activating protein 20 Neighboring gene centromere protein J Neighboring gene mcf.2 cell line derived transforming sequence-like b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative studies on duplicated tdrd7 paralogs in teleosts: Molecular evolution caused neo-functionalization. Wang B, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2019 Jun. PMID 31059868
    2. Tdrd12 Is Essential for Germ Cell Development and Maintenance in Zebrafish. Dai X, et al. Int J Mol Sci, 2017 Jun 7. PMID 28590408, Free PMC Article
    3. Control over the morphology and segregation of Zebrafish germ cell granules during embryonic development. Strasser MJ, et al. BMC Dev Biol, 2008 May 28. PMID 18507824, Free PMC Article
    4. An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse. Fouchécourt S, et al. BMC Evol Biol, 2019 Jul 3. PMID 31269894, Free PMC Article
    5. Early depletion of primordial germ cells in zebrafish promotes testis formation. Tzung KW, et al. Stem Cell Reports, 2015 Jan 13. PMID 25434820, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING finger protein 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      29548542..29571230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478968.1 → XP_021334643.1  RING finger protein 17

      UniProtKB/TrEMBL
      A0A8M9Q552, F1R3C5, F1R4H5
      Related
      ENSDARP00000116232.2, ENSDART00000132295.4
      Conserved Domains (2) summary
      pfam00567
      Location:633 → 746
      TUDOR; Tudor domain
      cl17238
      Location:8 → 60
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394759.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      153657..176345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692362.6 → XP_697454.3  RING finger protein 17

      UniProtKB/TrEMBL
      A0A8M9Q552, F1R3C5, F1R4H5
      Conserved Domains (2) summary
      pfam00567
      Location:633 → 746
      TUDOR; Tudor domain
      cl17238
      Location:8 → 60
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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