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    fip1l1b FIP1 like 1b (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 450021, updated on 27-Mar-2024

    Summary

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    Official Symbol
    fip1l1bprovided by ZNC
    Official Full Name
    FIP1 like 1b (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-138
    See related
    Ensembl:ENSDARG00000070431 AllianceGenome:ZFIN:ZDB-GENE-041010-138
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fip1l1; wu:fd36f11; zgc:103421
    Summary
    Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA polyadenylation and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See fip1l1b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (14382797..14403687)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13696286..13717174)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene collapsin response mediator protein 1 Neighboring gene D(1) dopamine receptor-like Neighboring gene OCIA domain-containing protein 1-like Neighboring gene cysteine-rich hydrophobic domain 2 Neighboring gene solute carrier family 34 member 2a antisense Neighboring gene solute carrier family 34 member 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Expression of zebrafish cxcl8 (interleukin-8) and its receptors during development and in response to immune stimulation. Oehlers SH, et al. Dev Comp Immunol, 2010 Mar. PMID 19941893
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC173769

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA 3'-end-processing factor FIP1
    Names
    FIP1 like 1
    FIP1-like 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006042.1 → NP_001006042.1  pre-mRNA 3'-end-processing factor FIP1

      See identical proteins and their annotated locations for NP_001006042.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083370
      UniProtKB/Swiss-Prot
      Q5XJD3
      UniProtKB/TrEMBL
      B2GRL3
      Related
      ENSDARP00000094123.2, ENSDART00000103346.5
      Conserved Domains (1) summary
      pfam05182
      Location:163 → 205
      Fip1; Fip1 motif

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      14382797..14403687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009306690.2 → XP_009304965.1  pre-mRNA 3'-end-processing factor FIP1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B4M9
      Conserved Domains (1) summary
      pfam05182
      Location:163 → 205
      Fip1; Fip1 motif

    2. XM_009306697.2 → XP_009304972.1  pre-mRNA 3'-end-processing factor FIP1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AYF7
      Conserved Domains (1) summary
      pfam05182
      Location:163 → 205
      Fip1; Fip1 motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XJD3.1 GenPept UniProtKB/Swiss-Prot:Q5XJD3

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