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    SOX5P1 SOX5 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 6661, updated on 10-Oct-2023

    Summary

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    Official Symbol
    SOX5P1provided by HGNC
    Official Full Name
    SOX5 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:11202
    See related
    AllianceGenome:HGNC:11202
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SOX29; SOX5P
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    Genomic context

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    See SOX5P1 in Genome Data Viewer
    Location:
    8q21.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (87788224..87789710, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (88911583..88913069, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (88800452..88801938, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr8:88619915-88620639 Neighboring gene uncharacterized LOC105375626 Neighboring gene IARS2 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:88637362-88637934 Neighboring gene NANOG hESC enhancer GRCh37_chr8:88763590-88764091 Neighboring gene zinc finger protein 773 pseudogene Neighboring gene DDB1 and CUL4 associated factor 4 like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of SOX5, a new member of the human SOX gene family. Wunderle VM, et al. Genomics, 1996 Sep 1. PMID 8812465
    2. Further complexity of the human SOX gene family revealed by the combined use of highly degenerate primers and nested PCR. Cremazy F, et al. FEBS Lett, 1998 Nov 6. PMID 9827568
    3. Twenty pairs of sox: extent, homology, and nomenclature of the mouse and human sox transcription factor gene families. Schepers GE, et al. Dev Cell, 2002 Aug. PMID 12194848

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • SRY (sex determining region Y)-box 5 pseudogene
    • SRY-box 5 pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_002726.5 

      Range
      101..1587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      87788224..87789710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      88911583..88913069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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