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    LOC101927647 uncharacterized LOC101927647 [ Homo sapiens (human) ]

    Gene ID: 101927647, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101927647
    Gene description
    uncharacterized LOC101927647
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927647 in Genome Data Viewer
    Location:
    3p25.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (15739381..15762186)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (15741835..15765374)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene biotinidase Neighboring gene ankyrin repeat domain 28 Neighboring gene microRNA 3134 Neighboring gene RNA, 7SL, cytoplasmic 4, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19535 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19538 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:15887901-15888400 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14110 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14112 Neighboring gene uncharacterized LOC107986064 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 8 Neighboring gene microRNA 563

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      15739381..15762186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001740422.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      15741835..15765374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073349.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases