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    F48F5.6 Secreted protein;Transcriptional regulator;Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 259685, updated on 7-Sep-2023

    Summary

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    Gene symbol
    F48F5.6
    Gene description
    Secreted protein;Transcriptional regulator;Uncharacterized protein
    Primary source
    WormBase:WBGene00009848
    Locus tag
    CELE_F48F5.6
    See related
    AllianceGenome:WB:WBGene00009848
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See F48F5.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (20448275..20453184, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Serpentine Receptor, class D (Delta) Neighboring gene Uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Secreted protein;Transcriptional regulator;Uncharacterized protein
    NP_001256918.1
    • Partially confirmed by transcript evidence
    NP_001256919.1
    • Confirmed by transcript evidence
    NP_001256920.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20448275..20453184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269990.4 → NP_001256919.1  Uncharacterized protein CELE_F48F5.6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256919.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7YX14

    2. NM_001269989.3 → NP_001256918.1  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C9IY37

    3. NM_001269991.1 → NP_001256920.1  Transcriptional regulator [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256920.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XV11

    RNA

    1. NR_070283.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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