Zfta zinc finger translocation associated [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zftaprovided by RGD
Official Full Name: zinc finger translocation associatedprovided by RGD
Primary source: RGD:1560108
See related: Ensembl:ENSRNOG00000032042 AllianceGenome:RGD:1560108
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1560108
Summary: Predicted to be involved in negative regulation of transcription, DNA-templated. Orthologous to human ZFTA (zinc finger translocation associated). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Thymus (RPKM 102.3), Lung (RPKM 79.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q43

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (214033720..214041851)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (204604557..204612688)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (222669642..222677372)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH139483 (e-PCR)
- UniSTS:221569

RH140316 (e-PCR)
- UniSTS:222393

RH129377 (e-PCR)
- UniSTS:212684

40.MMHAP45FRF10.seq (e-PCR)
- UniSTS:124368

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: zinc finger translocation-associated protein

Names: uncharacterized protein C11orf95 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001401804.1 → NP_001388733.1 zinc finger translocation-associated protein isoform 1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

F1LWF3

Related

ENSRNOP00000046062.4, ENSRNOT00000051855.4
NM_001401805.1 → NP_001388734.1 zinc finger translocation-associated protein isoform 2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000001