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    LOC105376360 uncharacterized LOC105376360 [ Homo sapiens (human) ]

    Gene ID: 105376360, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105376360
    Gene description
    uncharacterized LOC105376360
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 1.1), placenta (RPKM 0.6) and 1 other tissue See more
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    Genomic context

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    See LOC105376360 in Genome Data Viewer
    Location:
    10p15.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (3318695..3750764)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (3321031..3754639)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (3360887..3792956)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902537 Neighboring gene uncharacterized LOC107987146 Neighboring gene uncharacterized LOC105376356 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:3355722-3356921 Neighboring gene uncharacterized LOC124902565 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3373593-3374092 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3415456-3416655 Neighboring gene uncharacterized LOC105376358 Neighboring gene uncharacterized LOC105376357 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3441224-3441801 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3441802-3442378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3462411-3462910 Neighboring gene uncharacterized LOC124902538 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:3494454-3495091 Neighboring gene long intergenic non-protein coding RNA 2669 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3498292-3498835 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3499922-3500463 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3499379-3499921 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:3509500-3510699 Neighboring gene uncharacterized LOC107984192 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3528201-3529400 Neighboring gene uncharacterized LOC124902539 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:3568138-3568309 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3572357-3573556 Neighboring gene Sharpr-MPRA regulatory region 1905 Neighboring gene uncharacterized LOC107984193 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3690905-3691405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3710535-3711036 Neighboring gene MPRA-validated peak845 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3764787-3765986 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:3781762-3782961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2909 Neighboring gene uncharacterized LOC124902540 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:3796919-3798118 Neighboring gene uncharacterized LOC105376361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2910

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. Lipovich L, et al. Cereb Cortex, 2014 Jun. PMID 23377288
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131187.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356433, AL450322

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      3318695..3750764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      3321031..3754639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases