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    LINC00938 long intergenic non-protein coding RNA 938 [ Homo sapiens (human) ]

    Gene ID: 400027, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC00938provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 938provided by HGNC
    Primary source
    HGNC:HGNC:48630
    See related
    AllianceGenome:HGNC:48630
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC00938 in Genome Data Viewer
    Location:
    12q12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (45725720..45727921, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (45684348..45686549, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (46119503..46121704, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369743 Neighboring gene uncharacterized LOC124903092 Neighboring gene uncharacterized LOC105369744 Neighboring gene Sharpr-MPRA regulatory region 8796 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4374 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:46090484-46090652 Neighboring gene H3K27ac hESC enhancers GRCh37_chr12:46120332-46121294 and GRCh37_chr12:46121295-46122257 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4375 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4376 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46161969-46162913 Neighboring gene AT-rich interaction domain 2 Neighboring gene uncharacterized LOC105369745 Neighboring gene MPRA-validated peak1713 silencer Neighboring gene RNA, 7SL, cytoplasmic 246, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028408.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008124

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      45725720..45727921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      45684348..45686549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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