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    LINC00930 long intergenic non-protein coding RNA 930 [ Homo sapiens (human) ]

    Gene ID: 100144604, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC00930provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 930provided by HGNC
    Primary source
    HGNC:HGNC:48620
    See related
    AllianceGenome:HGNC:48620
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 21.8) See more
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    Genomic context

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    See LINC00930 in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (92567818..92572263, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (90330259..90334704, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (93111048..93115493, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104613533 Neighboring gene chromosome 15 putative open reading frame 32 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:93053451-93053972 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:93061329-93061830 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:93064789-93065381 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105459-93105998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105999-93106536 Neighboring gene MPRA-validated peak2428 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93156777-93157278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10112 Neighboring gene uncharacterized LOC124903559 Neighboring gene family with sequence similarity 174 member B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10114 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:93186854-93187634 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:93187635-93188414 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:93190755-93191534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6842 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10116 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93207617-93208116 Neighboring gene Sharpr-MPRA regulatory region 7580 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42675 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • FLJ35829

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_021493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091580, AI149645, AK093148, AL045331, DB045163, DB061727, DB337836

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      92567818..92572263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      90330259..90334704 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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