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    FAM245A family with sequence similarity 245 member A [ Homo sapiens (human) ]

    Gene ID: 728218, updated on 10-Oct-2023

    Summary

    Official Symbol
    FAM245Aprovided by HGNC
    Official Full Name
    family with sequence similarity 245 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:45163
    See related
    Ensembl:ENSG00000228055 AllianceGenome:HGNC:45163
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00864
    Expression
    Biased expression in kidney (RPKM 2.7), liver (RPKM 0.9) and 1 other tissue See more
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    Genomic context

    See FAM245A in Genome Data Viewer
    Location:
    10q23.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (87396574..87407700, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (88280173..88291295, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (89156331..89167457, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89142841-89143342 Neighboring gene nuclear pore associated protein 1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89150255-89151229 Neighboring gene cathepsin L pseudogene 1 Neighboring gene MPRA-validated peak1047 silencer Neighboring gene uncharacterized LOC112268063 Neighboring gene Sharpr-MPRA regulatory region 7232 Neighboring gene uncharacterized LOC112268064 Neighboring gene CRISPRi-validated cis-regulatory element chr10.3228 Neighboring gene microRNA 4678

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 864

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046091.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC065757
      Related
      ENST00000662339.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      87396574..87407700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      88280173..88291295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)