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    Clec2m C-type lectin domain family 2, member m [ Mus musculus (house mouse) ]

    Gene ID: 381816, updated on 27-Feb-2024

    Summary

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    Official Symbol
    Clec2mprovided by MGI
    Official Full Name
    C-type lectin domain family 2, member mprovided by MGI
    Primary source
    MGI:MGI:2685920
    See related
    Ensembl:ENSMUSG00000047720 AllianceGenome:MGI:2685920
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1074; SPATA78; 4922502D21Rik
    Expression
    Restricted expression toward testis adult (RPKM 271.7) See more
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    Genomic context

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    See Clec2m in Genome Data Viewer
    Location:
    6 F3; 6 63.25 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129299128..129308770, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129322165..129331807, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310001H17 gene Neighboring gene STARR-positive B cell enhancer ABC_E690 Neighboring gene STARR-positive B cell enhancer ABC_E6495 Neighboring gene STARR-positive B cell enhancer ABC_E4871 Neighboring gene STARR-positive B cell enhancer ABC_E8140 Neighboring gene STARR-positive B cell enhancer ABC_E9019 Neighboring gene STARR-positive B cell enhancer ABC_E6496 Neighboring gene STARR-positive B cell enhancer ABC_E6497 Neighboring gene STARR-positive B cell enhancer ABC_E1329 Neighboring gene STARR-positive B cell enhancer ABC_E11735 Neighboring gene STARR-positive B cell enhancer ABC_E1330 Neighboring gene CD69 antigen Neighboring gene STARR-positive B cell enhancer ABC_E3684 Neighboring gene STARR-positive B cell enhancer ABC_E9103 Neighboring gene STARR-seq mESC enhancer starr_17478 Neighboring gene STARR-seq mESC enhancer starr_17479 Neighboring gene C-type lectin domain family 12, member a Neighboring gene STARR-positive B cell enhancer ABC_E6498 Neighboring gene C-type lectin domain family 12, member B Neighboring gene STARR-positive B cell enhancer ABC_E4872 Neighboring gene C-type lectin domain family 1, member b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The complete inventory of receptors encoded by the rat natural killer cell gene complex. Flornes LM, et al. Immunogenetics, 2010 Aug. PMID 20544345, Free PMC Article
    2. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Clone Names

    • MGC107125

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin-like receptor 2m

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199034.4 → NP_950199.1  C-type lectin-like receptor 2m

      See identical proteins and their annotated locations for NP_950199.1

      Status: VALIDATED

      Source sequence(s)
      AC138620
      Consensus CDS
      CCDS20583.1
      UniProtKB/TrEMBL
      A0A0S2SPY8, Q8C634
      Related
      ENSMUSP00000062024.7, ENSMUST00000051283.8
      Conserved Domains (1) summary
      cd03593
      Location:71 → 184
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      129299128..129308770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506353.4 → XP_006506416.1  C-type lectin-like receptor 2m isoform X1

      UniProtKB/TrEMBL
      A0A0S2SPY8
      Conserved Domains (1) summary
      cd03593
      Location:71 → 152
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    2. XM_006506354.4 → XP_006506417.1  C-type lectin-like receptor 2m isoform X2

      Conserved Domains (1) summary
      cd03593
      Location:71 → 147
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    3. XM_006506355.5 → XP_006506418.1  C-type lectin-like receptor 2m isoform X3

      Conserved Domains (1) summary
      cd03593
      Location:71 → 148
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    Nucleotide Protein Strain
    Heading Accession and Version

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