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    Lrrc71 leucine rich repeat containing 71 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310689, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Lrrc71provided by RGD
    Official Full Name
    leucine rich repeat containing 71provided by RGD
    Primary source
    RGD:1309453
    See related
    Ensembl:ENSRNOG00000014937 AllianceGenome:RGD:1309453
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309453
    Summary
    Orthologous to human LRRC71 (leucine rich repeat containing 71). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 56.6), Lung (RPKM 52.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lrrc71 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (175492682..175505334, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (173194792..173207448, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (187101353..187114005, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC102546356 Neighboring gene Rho guanine nucleotide exchange factor 11 Neighboring gene uncharacterized LOC134485635 Neighboring gene platelet endothelial aggregation receptor 1 Neighboring gene neurotrophic receptor tyrosine kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 71

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107701.1 → NP_001101171.1  leucine-rich repeat-containing protein 71

      See identical proteins and their annotated locations for NP_001101171.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473976
      UniProtKB/TrEMBL
      A6J615, D3ZTZ6
      Related
      ENSRNOP00000020147.3, ENSRNOT00000020147.6
      Conserved Domains (2) summary
      cd00116
      Location:137 → 308
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:168 → 196
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      175492682..175505334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063281890.1 → XP_063137960.1  leucine-rich repeat-containing protein 71 isoform X2

    2. XM_006232671.5 → XP_006232733.1  leucine-rich repeat-containing protein 71 isoform X1

      Conserved Domains (2) summary
      cd00116
      Location:137 → 308
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:168 → 196
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_063281892.1 → XP_063137962.1  leucine-rich repeat-containing protein 71 isoform X4

    4. XM_039102395.2 → XP_038958323.1  leucine-rich repeat-containing protein 71 isoform X4

      Conserved Domains (2) summary
      sd00033
      Location:9 → 28
      LRR_RI; leucine-rich repeat [structural motif]
      cl39015
      Location:8 → 93
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    5. XM_063281891.1 → XP_063137961.1  leucine-rich repeat-containing protein 71 isoform X3

    RNA

    1. XR_005500298.2 RNA Sequence

    2. XR_005500297.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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