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    KRT16P2 keratin 16 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 400578, updated on 10-Oct-2023

    Summary

    Official Symbol
    KRT16P2provided by HGNC
    Official Full Name
    keratin 16 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:37807
    See related
    AllianceGenome:HGNC:37807
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in esophagus (RPKM 8.9), skin (RPKM 2.5) and 3 other tissues See more
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    Genomic context

    See KRT16P2 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16830483..16832833, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16776240..16778590, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16733797..16736147, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 2 pseudogene 4 Neighboring gene MPRA-validated peak2752 silencer Neighboring gene keratin 16 pseudogene 6 Neighboring gene uncharacterized LOC105371552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16734092-16734602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16735814-16736326 Neighboring gene uncharacterized LOC105371551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16737352-16737864 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738378-16738890 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738891-16739402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16743553-16744102 Neighboring gene distal SMS-REP block C recombination region Neighboring gene keratin 17 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16748284-16749150 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16749151-16750015 Neighboring gene keratin 17 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029392.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022596

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      16830483..16832833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      16776240..16778590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)