U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DNAJA1P5 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 94236, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    DNAJA1P5provided by HGNC
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:39341
    See related
    AllianceGenome:HGNC:39341
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HEJ1
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DNAJA1P5 in Genome Data Viewer
    Location:
    1p21.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (101872012..101894743)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (101721203..101743938)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (102337568..102360299)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1709 Neighboring gene ribosomal protein SA pseudogene 19 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:102308332-102309235 Neighboring gene NANOG hESC enhancer GRCh37_chr1:102312328-102312832 Neighboring gene olfactomedin 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:102334091-102334592 Neighboring gene RNA, U6 small nuclear 352, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:102372718-102373384 Neighboring gene meiotic recombination hotspot Q Neighboring gene uncharacterized LOC107985095 Neighboring gene uncharacterized LOC124904645

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Other Names

    • DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5
    • DnaJ pseudogene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033424.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF395440, AL356280

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      101872012..101894743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      101721203..101743938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_000959.1: Suppressed sequence

      Description
      NG_000959.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NG_027122.1: Suppressed sequence

      Description
      NG_027122.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases