znf638 zinc finger protein 638 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: znf638provided by ZNC
Official Full Name: zinc finger protein 638provided by ZNC
Primary source: ZFIN:ZDB-GENE-141216-265
See related: Ensembl:ENSDARG00000104169 AllianceGenome:ZFIN:ZDB-GENE-141216-265
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-212k18.4
Summary: Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human ZNF638 (zinc finger protein 638). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (19625622..19661812, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (19373654..19390386, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa02d11.s1 (e-PCR)
- UniSTS:189510

fj82c04.x1 (e-PCR)
- UniSTS:200019

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of RNA splicing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger protein 638

Names: zinc finger protein 638-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

19625622..19661812 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021477756.1 → XP_021333431.1 zinc finger protein 638 isoform X3

UniProtKB/TrEMBL

A0A8M9QCJ6

Conserved Domains (4) summary

smart00451
Location:2246 → 2280

ZnF_U1; U1-like zinc finger

cd12436
Location:773 → 844

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cd12716
Location:941 → 1016

RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)

cl26511
Location:1296 → 2234

Neuromodulin_N; Gap junction protein N-terminal region
XM_021477755.1 → XP_021333430.1 zinc finger protein 638 isoform X2

UniProtKB/TrEMBL

A0A8M9QHK5

Conserved Domains (4) summary

smart00451
Location:2247 → 2281

ZnF_U1; U1-like zinc finger

cd12436
Location:773 → 844

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cd12716
Location:942 → 1017

RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)

cl26511
Location:1297 → 2235

Neuromodulin_N; Gap junction protein N-terminal region
XM_021477757.1 → XP_021333432.1 zinc finger protein 638 isoform X1

UniProtKB/TrEMBL

A0A0R4IE57, A0A0R4IZ89, A0A8M3B130

Related

ENSDARP00000141709.1, ENSDART00000160936.2

Conserved Domains (4) summary

smart00451
Location:2135 → 2169

ZnF_U1; U1-like zinc finger

cd12436
Location:661 → 732

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cl17169
Location:830 → 905

RRM_SF; RNA recognition motif (RRM) superfamily

cl26511
Location:1185 → 2123

Neuromodulin_N; Gap junction protein N-terminal region
XM_021477758.1 → XP_021333433.1 zinc finger protein 638 isoform X1

UniProtKB/TrEMBL

A0A0R4IE57, A0A0R4IZ89, A0A8M3B130

Related

ENSDARP00000132923.2, ENSDART00000163686.2

Conserved Domains (4) summary

smart00451
Location:2135 → 2169

ZnF_U1; U1-like zinc finger

cd12436
Location:661 → 732

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cl17169
Location:830 → 905

RRM_SF; RNA recognition motif (RRM) superfamily

cl26511
Location:1185 → 2123

Neuromodulin_N; Gap junction protein N-terminal region

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

Range

347829..364566 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009303099.3 → XP_009301374.1 zinc finger protein 638 isoform X4

UniProtKB/TrEMBL

A0A8M3AU39

Conserved Domains (3) summary

smart00451
Location:2134 → 2168

ZnF_U1; U1-like zinc finger

cd12436
Location:661 → 732

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cl17169
Location:829 → 904

RRM_SF; RNA recognition motif (RRM) superfamily
XM_009303097.3 → XP_009301372.1 zinc finger protein 638 isoform X1

See identical proteins and their annotated locations for XP_009301372.1

UniProtKB/TrEMBL

A0A0R4IE57, A0A0R4IZ89, A0A8M3B130

Conserved Domains (4) summary

smart00451
Location:2135 → 2169

ZnF_U1; U1-like zinc finger

cd12436
Location:661 → 732

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cl17169
Location:830 → 905

RRM_SF; RNA recognition motif (RRM) superfamily

cl26511
Location:1185 → 2123

Neuromodulin_N; Gap junction protein N-terminal region
XM_009303098.3 → XP_009301373.1 zinc finger protein 638 isoform X1

See identical proteins and their annotated locations for XP_009301373.1

UniProtKB/TrEMBL

A0A0R4IE57, A0A0R4IZ89, A0A8M3B130

Conserved Domains (4) summary

smart00451
Location:2135 → 2169

ZnF_U1; U1-like zinc finger

cd12436
Location:661 → 732

RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

cl17169
Location:830 → 905

RRM_SF; RNA recognition motif (RRM) superfamily

cl26511
Location:1185 → 2123

Neuromodulin_N; Gap junction protein N-terminal region